MASTtreedist

Version 1.0 || July 2012
Copyright (c) Hong Huang & Yongji Li

School of Information, University of South Florida, Tampa, FL, 33620

Image Copyright

MASTtreedist is a software for phylogenetic tree-to-tree distance comparison by calculating these trees' "Maximum Agreemen SubTrees" in order to improve the visualization of tree "landscape". Our newly developed software program is integrated as part of existing phylogenetic analysis modular program Mesquite with build-in Tree Set Viz package.

The program should run in Unix/Linux, Macintosh or Windows with Java runtime environment (1.2 or above).

This program is a free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation. This program is distributed in the hope that it will be useful, but without guarantee of support or maintenance.

Software Links

You can click here to review Mesquite software package, and to obtain official Mesquite1.01 class files and source codes (e.g., Macintosh, Windows, UNIX/LINUX), as well as user manual & example files.

You can click here to review Tree Set Viz software package, and to obtain official Tree Set Viz module ("treecomp-classfile-022004.tar"). This is correspondent class files available along with the source code ("treecomp-source2.1.tar.gz"), as well as user manual & example files. The "treecompsource2.1.tar.gz" is the most current source code available from the website.

You can obtain treecomp & Mesquite class, source files by clicking the following links:

Treecomps and Mesquite files: treecomp_class_sources.zip

You can obtain MASTtreedist class files by clicking the following links:

MASTtreedist classes and source codes: MASTtreedist72912.zip

Documentations

You can click here to obtain the MASTtreedist User Manual.

Citation

Huang H., Li Y.(2012). MASTtreedist: Visualization of tree space based on Maximum Agreement Subtree.   Journal of Computational Biology (in press).

Example files

You can click here to obtain Camp.nex.

You can click here to obtain PEVCCA.nex.

You can click here to obtain Hibbett datasets: HibbettData.zip.

You can click here to obtain example_scissor.nexus.